PIs: Leonid Goubergrits, Katharina Vellguth, Titus Kühne, Fabian Barbieri
Workflow from medical image data to surface representation for computational fluid dynamics simulations
Aim:
The project develops a comprehensive simulation framework for personalized analysis of heart diseases. Coupling advanced numerical models, it integrates clinical data to simulate patient-specific conditions and outcomes, aiding in research, decision support, and treatment planning.
Comparison of intracardiac hemodynamics before and after surgical ventricular restoration
Description:
For the diagnosis and treatment of heart diseases, in silico medicine plays an increasingly important role. In the first funding period of our project in the SPP2311 program, we successfully developed a set of computational models to investigate clinically decisive hemodynamic parameters, including a verified image-based prescribed-motion fluid-structure-interaction (FSI) approach, combined with statistical shape models (SSM) and a lumped element model (LEM).
In the second project phase, we will extend, refine, and couple the existing models to obtain a comprehensive methodological framework that allows robust representation of individual patient conditions and reliable simulation of biomarkers for clinically relevant heart diseases. The FSI approach will be complemented by important structural parameters, namely myocardial contraction, global longitudinal strains, and heart valve dynamics. For this purpose, the SSM and LEM will be employed to enhance and complement clinical real-world data and provide boundary conditions for the biomechanical simulations. Close cooperation between engineers and clinicians will ensure the addressing of relevant clinical needs and the evaluation of simulated results with respect to clinical real-world data. Prospective data of healthy volunteers and phantom measurements will be acquired for methodological development and validation. Subsequently, retrospective patient data of pathological cases will be used to show clinical applicability. The framework will enable us to approach individual treatment planning by creating a personalized baseline model for a specific dataset in a largely standardized and automated manner. The baseline model can be used to simulate altered patient states, which are either not measurable in clinical routine, such as a post-operative treatment outcome, or imply additional risk to the patient, like stress testing. Both baseline and altered patient states can be simulated based on all common image modalities in cardiology, emphasizing our framework’s generalizability.
The technical outcome of this project will be a validated methodological framework with robust coupling and flexible combination of the modeling modules (LEM, FSI, SSM), covering simulations of the circulation, hemodynamics, structure, and anatomical features with the possibility to complement missing clinical data. The expected results on the clinical side comprise the applicability of the methodological framework to research different clinical questions and as treatment planning tools and for decision support applicable to different sources of clinical data.
Involved Institutions:
Deutsches Herzzentrum der Charité, Institute of Computer-assisted Cardiovascular Medicine, Berlin, Germany
Deutsches Herzzentrum der Charité, Department of Cardiology, Angiology and Intensive Care Medicine, Berlin, Germany
Charité – Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany
Links:
Applicants:
Publications
Obermeier, Lukas; Wiegand, M.; Hellmeier, F.; Manini, C.; Kuehne, Titus; Goubergrits, Leonid
Verification Study of In Silico Computed Intracardiac Blood Flow With 4D Flow MRI Artikel
In: IEEE Transactions on Biomedical Engineering, Bd. 71, Ausg. 9, S. 2568 - 2579, 2024.
@article{nokeyc,
title = {Verification Study of In Silico Computed Intracardiac Blood Flow With 4D Flow MRI},
author = {Lukas Obermeier and M. Wiegand and F. Hellmeier and C. Manini and Titus Kuehne and Leonid Goubergrits},
editor = {IEEE},
url = {https://ieeexplore.ieee.org/document/10478556},
doi = {10.1109/TBME.2024.3381212},
year = {2024},
date = {2024-03-25},
urldate = {2024-03-25},
journal = {IEEE Transactions on Biomedical Engineering},
volume = {71},
issue = {9},
pages = {2568 - 2579},
abstract = {Objective: Major challenges for clinical applications of in silico medicine are limitations in time and computational resources. Computational approaches should therefore be tailored to specific applications with relatively low complexity and must be verified and validated against clinical gold standards. Methods: This study performed computational fluid dynamics simulations of left ventricular hemodynamics of different complexity based on shape reconstruction from steady state gradient echo magnetic resonance imaging (MRI) data. Computed flow results of a rigid wall model (RWM) and a prescribed motion fluid-structure interaction (PM-FSI) model were compared against phase-contrast MRI measurements for three healthy subjects. Results: Extracted boundary conditions from the steady state MRI sequences as well as computed metrics, such as flow rate, valve velocities, and kinetic energy show good agreement with in vivo flow measurements. Regional flow analysis reveals larger differences. Conclusion: Basic flow structures are well captured with RWM and PM-FSI. For the computation of further biomarkers like washout or flow efficiency, usage of PM-FSI is required. Regarding boundary-near flow, more accurate anatomical models are inevitable. Significance: These results delineate areas of application of both methods and lay a foundation for larger validation studies and sensitivity analysis for healthy and diseased cases, being an essential step upon clinical translations.},
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Obermeier, Lukas; Korte, Jana; Vellguth, Katharina; Barbieri, Fabian; Hellmeier, Florian; Berg, Philipp; Goubergrits, Leonid
In: GAMM-Mitteilungen, 2024.
@article{nokeyg,
title = {Inter-model and inter-modality analysis of left ventricular hemodynamics: comparative study of two CFD approaches based on TTE and MRI},
author = {Lukas Obermeier and Jana Korte and Katharina Vellguth and Fabian Barbieri and Florian Hellmeier and Philipp Berg and Leonid Goubergrits},
url = {https://onlinelibrary.wiley.com/doi/full/10.1002/gamm.202370004},
doi = {10.1002/gamm.202370004},
year = {2024},
date = {2024-01-23},
urldate = {2024-01-23},
journal = {GAMM-Mitteilungen},
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pubstate = {published},
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Vellguth, Katharina; Barbieri, Fabian; Reinthaler, Markus; Kasner, Mario; Landmesser, Ulf; Kuehne, Titus; Hennemuth, Anja; Walczak, Lars; Goubergrits, Leonid
In: Front. Cardiovasc. Med., Bd. 9, 2022, ISSN: 2297-055X.
@article{Vellguth2022,
title = {Effect of transcatheter edge-to-edge repair device position on diastolic hemodynamic parameters: An echocardiography-based simulation study},
author = {Katharina Vellguth and Fabian Barbieri and Markus Reinthaler and Mario Kasner and Ulf Landmesser and Titus Kuehne and Anja Hennemuth and Lars Walczak and Leonid Goubergrits},
doi = {10.3389/fcvm.2022.915074},
issn = {2297-055X},
year = {2022},
date = {2022-08-24},
urldate = {2022-08-24},
journal = {Front. Cardiovasc. Med.},
volume = {9},
publisher = {Frontiers Media SA},
abstract = {<jats:sec><jats:title>Background</jats:title><jats:p>Transcatheter edge-to-edge repair (TEER) has developed from innovative technology to an established treatment strategy of mitral regurgitation (MR). The risk of iatrogenic mitral stenosis after TEER is, however, a critical factor in the conflict of interest between maximal reduction of MR and minimal impairment of left ventricular filling. We aim to investigate systematically the impact of device position on the post treatment hemodynamic outcome by involving the patient-specific segmentation of the diseased mitral valve.</jats:p></jats:sec><jats:sec><jats:title>Materials and methods</jats:title><jats:p>Transesophageal echocardiographic image data of ten patients with severe MR (age: 57 ± 8 years, 20% female) were segmented and virtually treated with TEER at three positions by using a position based dynamics approach. Pre- and post-interventional patient geometries were preprocessed for computational fluid dynamics (CFD) and simulated at peak-diastole with patient-specific blood flow boundary conditions. Simulations were performed with boundary conditions mimicking rest and stress. The simulation results were compared with clinical data acquired for a cohort of 21 symptomatic MR patients (age: 79 ± 6 years, 43% female) treated with TEER.</jats:p></jats:sec><jats:sec><jats:title>Results</jats:title><jats:p>Virtual TEER reduces the mitral valve area (MVA) from 7.5 ± 1.6 to 2.6 ± 0.6 cm<jats:sup>2</jats:sup>. Central device positioning resulted in a 14% smaller MVA than eccentric device positions. Furthermore, residual MVA is better predictable for central than for eccentric device positions (<jats:italic>R</jats:italic><jats:sup>2</jats:sup> = 0.81 vs. <jats:italic>R</jats:italic><jats:sup>2</jats:sup> = 0.49). The MVA reduction led to significantly higher maximal diastolic velocities (pre: 0.9 ± 0.2 m/s, post: 2.0 ± 0.5 m/s) and pressure gradients (pre: 1.5 ± 0.6 mmHg, post: 16.3 ± 9 mmHg) in spite of a mean flow rate reduction by 23% due to reduced MR after the treatment. On average, velocities were 12% and pressure gradients were 25% higher with devices in central compared to lateral or medial positions.</jats:p></jats:sec><jats:sec><jats:title>Conclusion</jats:title><jats:p>Virtual TEER treatment combined with CFD is a promising tool for predicting individual morphometric and hemodynamic outcomes. Such a tool can potentially be used to support clinical decision making, procedure planning, and risk estimation to prevent post-procedural iatrogenic mitral stenosis.</jats:p></jats:sec>},
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Goubergrits, Leonid; Vellguth, Katharina; Obermeier, Lukas; Schlief, Adriano; Tautz, Lennart; Bruening, Jan; Lamecker, Hans; Szengel, Angelika; Nemchyna, Olena; Knosalla, Christoph; Kuehne, Titus; Solowjowa, Natalia
In: Front. Cardiovasc. Med., 05 July 2022, Bd. Sec. Cardiovascular Imaging, Ausg. Volume 9 - 2022, S. 901902, 2022.
@article{10.3389/fcvm.2022.901902,
title = {CT-Based Analysis of Left Ventricular Hemodynamics Using Statistical Shape Modeling and Computational Fluid Dynamics},
author = {Leonid Goubergrits and Katharina Vellguth and Lukas Obermeier and Adriano Schlief and Lennart Tautz and Jan Bruening and Hans Lamecker and Angelika Szengel and Olena Nemchyna and Christoph Knosalla and Titus Kuehne and Natalia Solowjowa},
editor = {Frontiers Cardiovascular Medicine},
url = {https://www.frontiersin.org/articles/10.3389/fcvm.2022.901902/full},
doi = {10.3389/fcvm.2022.901902“},
year = {2022},
date = {2022-07-05},
urldate = {2022-07-05},
journal = {Front. Cardiovasc. Med., 05 July 2022},
volume = {Sec. Cardiovascular Imaging},
issue = {Volume 9 - 2022},
pages = {901902},
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pubstate = {published},
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Obermeier, Lukas; Vellguth, Katharina; Schlief, Adriano; Tautz, Lennart; Bruening, Jan; Knosalla, Christoph; Kuehne, Titus; Solowjowa, Natalia; Goubergrits, Leonid
In: Frontiers in Cardiovascular Medicine, Ausg. 9/2022, 2022, ISSN: 2297-055X.
@article{Obermeier2022,
title = {CT-Based Simulation of Left Ventricular Hemodynamics: A Pilot Study in Mitral Regurgitation and Left Ventricle Aneurysm Patients},
author = {Lukas Obermeier and Katharina Vellguth and Adriano Schlief and Lennart Tautz and Jan Bruening and Christoph Knosalla and Titus Kuehne and Natalia Solowjowa and Leonid Goubergrits},
doi = {10.3389/fcvm.2022.828556},
issn = {2297-055X},
year = {2022},
date = {2022-03-22},
urldate = {2022-03-22},
journal = {Frontiers in Cardiovascular Medicine},
issue = {9/2022},
abstract = {Background: Cardiac CT (CCT) is well suited for a detailed analysis of heart structures due to its high spatial resolution, but in contrast to MRI and echocardiography, CCT does not allow an assessment of intracardiac flow. Computational fluid dynamics (CFD) can complement this shortcoming. It enables the computation of hemodynamics at a high spatio-temporal resolution based on medical images. The aim of this proposed study is to establish a CCT-based CFD methodology for the analysis of left ventricle (LV) hemodynamics and to assess the usability of the computational framework for clinical practice.
Materials and methods: The methodology is demonstrated by means of four cases selected from a cohort of 125 multiphase CCT examinations of heart failure patients. These cases represent subcohorts of patients with and without LV aneurysm and with severe and no mitral regurgitation (MR). All selected LVs are dilated and characterized by a reduced ejection fraction (EF). End-diastolic and end-systolic image data was used to reconstruct LV geometries with 2D valves as well as the ventricular movement. The intraventricular hemodynamics were computed with a prescribed-motion CFD approach and evaluated in terms of large-scale flow patterns, energetic behavior, and intraventricular washout.
Results: In the MR patients, a disrupted E-wave jet, a fragmentary diastolic vortex formation and an increased specific energy dissipation in systole are observed. In all cases, regions with an impaired washout are visible. The results furthermore indicate that considering several cycles might provide a more detailed view of the washout process. The pre-processing times and computational expenses are in reach of clinical feasibility.
Conclusion: The proposed CCT-based CFD method allows to compute patient-specific intraventricular hemodynamics and thus complements the informative value of CCT. The method can be applied to any CCT data of common quality and represents a fair balance between model accuracy and overall expenses. With further model enhancements, the computational framework has the potential to be embedded in clinical routine workflows, to support clinical decision making and treatment planning.
Keywords: cardiac computed tomography; computational fluid dynamics; fluid-structure interaction; image-based modeling; intraventricular hemodynamics; left ventricle aneurysm; mitral regurgitation.},
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